Read e-book online Annual Plant Reviews Volume 35: Plant Systems Biology PDF

By Gloria Coruzzi, Rodrigo Gutiérrez

ISBN-10: 140516283X

ISBN-13: 9781405162838

ISBN-10: 1444312243

ISBN-13: 9781444312249

Plant structures Biology is a superb new addition to the more and more famous and revered Annual Plant Reviews. cut up into components, this name bargains the reader:

  • A primary conceptual framework for structures Biology together with community TheoryContent:
    Chapter 1 platforms Biology: rules and purposes in Plant study (pages 1–40): Gloria M. Coruzzi, Alejandro R. Burga, Manpreet S. Katari and Rodrigo A. Gutierrez
    Chapter 2 an outline of platforms Biology (pages 41–66): Reka Albert and Sarah M. Assmann
    Chapter three Prokaryotic structures Biology (pages 67–136): Thadeous Kacmarczyk, Peter Waltman and Richard Bonneau
    Chapter four Animal structures Biology: in the direction of a structures View of improvement in C. Elegans (pages 137–165): Anita Fernandez, Fabio Piano and Kristin C. Gunsalus
    Chapter five software program instruments for platforms Biology: Visualizing the results of N Experiments on M Entities (pages 167–195): Chris Poultney and Dennis Shasha
    Chapter 6 The Plant Genome: deciphering the Transcriptional Hardwiring (pages 196–228): Erich Grotewold and Nathan Springer
    Chapter 7 The RNA international: settling on miRNA?Target RNA Pairs as attainable lacking hyperlinks in Multi?Network types (pages 229–242): Pamela J. eco-friendly and Blake C. Meyers
    Chapter eight Proteomics: atmosphere the degree for platforms Biology (pages 243–257): Scott C. Peck
    Chapter nine Metabolomics: Integrating the Metabolome and the Proteome for platforms Biology (pages 258–289): Wolfram Weckwerth
    Chapter 10 From the Ionome to the Genome: determining the Gene Networks that regulate the Mineral content material of vegetation (pages 290–303): Mary Lou Guerinot, Ivan Baxter and David E. Salt
    Chapter eleven improvement and platforms Biology: driving the Genomics Wave in the direction of a structures realizing of Root improvement (pages 304–330): Siobhan M. Brady and Philip N. Benfey
    Chapter 12 views on Ecological and Evolutionary structures Biology (pages 331–349): Christina L. Richards, Yoshie Hanzawa, Manpreet S. Katari, Ian M. Ehrenreich, Kathleen E. Engelmann and Michael D. Purugganan

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Additional resources for Annual Plant Reviews Volume 35: Plant Systems Biology

Example text

4 Strategies for genomic data integration Here is an interesting question: What do Belgium and systems biology have in common? Well, definitely not their 500 varieties of beer. Interestingly, they both share a motto: ‘L’union fait la force’ (‘Strength through unity’). Our universe is a noisy place. By noise, we are not just talking about an unintended sound that reaches our ears, but it can also be something unpleasant, unexpected and undesired. The word ‘noise’ can be traced back to the Latin word nausea (feeling of sickness), and there is no doubt that some scientists feel that way when facing it.

Hundreds of microarray experiments (available through these resources) have been performed comparing diverse developmental stages, soil conditions and compositions, pathogen infections, oxidative stress and response to diverse chemicals. The information obtained from these experiments has being useful in the detection of new genes or new gene functions involved in particular processes. It is important to emphasize that the transcriptome does not refer just to messenger RNAs. In addition to mRNAs, ribosomal RNAs (rRNAs) and tRNAs (transfer RNAs), there is great interest in studying the expression of the large and heterogeneous population of small RNAs in plants (Finnegan and Matzke, 2003).

Distance in networks is measured by the number of links that we need to pass when travelling from node A to node B (path from A to B). The path with the smallest number of edges between nodes A and B is the ‘shortest path’. If we take all possible pair of nodes in a network and c01 BLBK130-Coruzzi December 30, 2008 16:42 Char Count= Systems Biology 9 calculate the average length of all the shortest paths, we obtain a measure called the ‘mean path length’. The diameter of the network is the maximal distance (from the shortest path set) between any pair of nodes.

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Annual Plant Reviews Volume 35: Plant Systems Biology by Gloria Coruzzi, Rodrigo Gutiérrez


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